Consequences of population structure on genes under balancing selection

This paper describes a new approach to modeling population structure for genes under strong balancing selection of the type seen in plant self-incompatibility systems and the major histocompatibility complex (MHC) system of vertebrates. Simple analytic solutions for the number of alleles maintained at equilibrium and the expected proportion of alleles shared between demes at various levels are derived and checked against simulation results. The theory accurately captures the dynamics of allele number in a subdivided population and identifies important values of m (migration rate) at which allele number and distribution change qualitatively. Starting from a panmictic population, as migration among demes decreases a qualitative change in dynamics is seen at approximately m(crit) approximately equal to the square root of(s/4piNT) where NT is the total population size and s is a measure of the strength of selection. At this point, demes can no longer maintain their panmictic allele number, due to increasing isolation from the total population. Another qualitative change occurs at a migration rate on the same order of magnitude as the mutation rate, mu. At this point, the demes are highly differentiated for allele complement, and the total number of alleles in the population is increased. Because in general u < m<(crit) at intermediate migration rates slightly fewer alleles may be maintained in the total population than are maintained at panmixia. Within this range, total allele number may not be the best indicator of whether a population is effectively panmictic, and some caution should be used when interpreting samples from such populations. The theory presented here can help to analyze data from genes under balancing selection in subdivided populations.     

从我国分离的3株蛙虹彩病毒与蛙病毒3型主要衣壳蛋白基因同源性的比较

Since 1995,three viral isolates named RGV9506,RGV9807 and RGV9808 associated with frog mortality were isolated from farm-raised frogs (Rana grylio virus,RGV) in China.Both ultrastructural morphology and serological characterisitics had shown that the RGV isolates belong to genus Ranavirus. The DNA sequence analysis of the 5′end of the major capsid protein(MCP) gene of RGV isolates by PCR amplification produced a 531bp fragment.DNA templates were prepared from cells infected with different RGV isolates and the specific primers designed were based on highly conserved region at the 5′ of the gene encoding Frog virus 3(FV3) MCP, which is the typical species of the genus Ranavirus.The PCR products indicate that the nucleotide sequence of MCP gene of the RGV9506,RGV9807 and RGV9808 showed 99.6%, 99.8% and 98.4% homology respectively with the corresponding region of the MCP gene of FV3.     

Management into the Development Strategies of Urbanizing Regions in Asia: Implications of Urban Function, Form, and Role

The way urbanization unfolds over the next few decades in the developing countries of Asia will have profound implications for sustainability. One of the more important opportunities is to guide urbanization along pathways that begin to uncouple these gains in well-being from rising levels of energy use. Increasing energy use for transport, construction, climate control in houses and offices, and industrial processes is often accompanied by increasing levels of atmospheric emissions that impact human health, ecosystem functions, and the climate system. Agriculture, forestry, and animal husbandry alter carbon stocks and fluxes as carbon dioxide, methane, and black carbon. In this article we explore how carbon management could be integrated into the development strategies of cities and urbanizing regions. In particular, we explore how changes in urban form, functions, and roles might alter the timing, aggregation, spatial distribution, and composition of carbon emissions. Our emphasis is on identifying system linkages and points of leverage. The study draws primarily on emission inventories and regional development histories carried out in the regions around the cities of Manila, Jakarta, Ho Chi Minh City, New Delhi, and Chiang Mai. We find that how urban functions, such as mobility, shelter, and food, are provided has major implications for carbon emissions, and that each function is influenced by urban form and role in distinct ways. Our case studies highlight the need for major "U-turns" in urban policy.     

Reorganization of multivesicular bodies regulates MHC class II antigen presentation by dendritic cells

Immature dendritic cells (DCs) sample their environment for antigens and after stimulation present peptide associated with major histocompatibility complex class II (MHC II) to naive T cells. We have studied the intracellular trafficking of MHC II in cultured DCs. In immature cells, the majority of MHC II was stored intracellularly at the internal vesicles of multivesicular bodies (MVBs). In contrast, DM, an accessory molecule required for peptide loading, was located predominantly at the limiting membrane of MVBs. After stimulation, the internal vesicles carrying MHC II were transferred to the limiting membrane of the MVB, bringing MHC II and DM to the same membrane domain. Concomitantly, the MVBs transformed into long tubular organelles that extended into the periphery of the cells. Vesicles that were formed at the tips of these tubules nonselectively incorporated MHC II and DM and presumably mediated transport to the plasma membrane. We propose that in maturing DCs, the reorganization of MVBs is fundamental for the timing of MHC II antigen loading and transport to the plasma membrane.     

Exchanges of short polymorphic DNA segments predating speciation in feline major histocompatibility complex class I genes

Sequence comparisons of 14 distinct MHC class I cDNA clones isolated from species representing the three major taxonomic lineages of Felidae (domestic cat lineage, ocelot lineage, and pantherine lineage) revealed that feline MHC class I alleles have highly mosaic structures with short polymorphic sequence motifs that are rearranged between alleles of individual MHC loci, between MHC class I genes within cat species, and between homologous MHC loci in different species. The pattern of sequence variation in felids supports the role of the following factors in production and maintenance of MHC variation: (1) gradual spontaneous mutation; (2) selective pressure to conserve certain residues but also to vary in hypervariable regions, notably residues that functionally participate in antigen recognition and presentation; and (3) recombination-mediated gene exchange between alleles and between related genes. The overall amount of genetic variation observed among MHC class I genes in the Felidae family is no greater than the amount of variation within any outbred cat species (i.e., domestic cat, ocelot). The occurrence of equivalent levels of polymorphism plus the simultaneous persistence of the same sequence motifs in divergent feline species suggest that most MHC class I nucleotide site polymorphism predated species divergences. Ancient polymorphisms have been transmitted through the speciation events and modern feline MHC class I alleles were derived by recombinational exchange of polymorphic sequence motifs. Moreover, some of these sequence motifs were found in other mammalian MHC class I genes, such as classical human HLA-B5, nonclassical human HLA-E class I genes, and bovine class I genes. These results raise the prospect of an ancient origin for some motifs, although the possibility of convergence in parallel mammalian radiations cannot be excluded. Correspondence to: N. Yuhki     

Fine specificity of CD4+ T cell responses to the dominant encephalitogenic PLP 139-151 peptide in SJL/J mice

PLP 139-151(S) is the major encephalitogenic epitope of PLP in the SJL/J mouse. CD4⁺ T cells specific for PLP 139-151(S) induce a relapsing-remitting form of EAE which is similar to the human demyelinating disease MS in both clinical course and histopathology. We are interested in events involved in activation of autoreactive T cells and how to specifically regulate these immune response to both prevent and treat ongoing demyelinating disease. In the current study, we examined the effect of both amino acid substitutions and deletions in the native PLP 139-151(S) peptide to identify which residues are critical for immunogenicity and encephalitogenicity. Conservative and nonconservative substitutions at position 145 diminished or completely destroyed the encephalitogenic potential of the peptide without affecting the ability to recall a proliferative response in lymph node T cells primed with the native PLP 139-151(S) peptide indicating an interesting dichotomy between ability to induce T cell proliferation and ability to induce active clinical disease. In addition, tryptophan at position 144 was identified as a critical TCR contact site as a peptide containing an alanine for tryptophan at this position (A144) primed a unique population of T cells which did not cross react with the native PLP 139-151(S). In addition, A144 was unable to stimulate PLP 139-151(S)-specific T cells in vitro or to induce active relapsing EAE in vivo. The significance of these results to the potential development of new strategies for preventing and treating T cell-mediated autoimmune diseases is discussed.Special issue dedicated to Dr. Majorie B. Lees.     

中国生态学的研究现状及发展趋势──近年来国家自然科学基金委员会生态学科资助项目分析

本文系统地分析了近年来国家自然科学基金委生态学科受理基金项目的批准率及资助强度,分析了项目负责人及主要参加者的年龄结构和职称结构及其动态变化,以资助项目的题目及关键词出现的频率为依据,探讨了近年来我国生态学的发展趋势。重点研究领域和生态学的研究热点。     

Effect of an ectoparasite on lay date, nest-site choice, desertion, and hatching success in the great tit (Pants major)

Ectoparasites are common in most bird species, but experimentalevidence of their effects on life-history traits is scarce.We investigated experimentally the effects of the hematophagoushen flea (Ceratophyllus gallinae) on timing of reproduction,nest-site choice, nest desertion, clutch size, and hatchingsuccess in the great tit (Parus major). When great tits wereoffered a choice on their territory between an infested anda parasite-free nest-box, they chose the one without parasites.When there was no choice, the great tits in a territory containingan infested nest-box delayed laying the clutch by 11 days ascompared with the birds that were offered a parasite-free nestingopportunity. The finding that there was no difference in phenotypictraits related to dominance between the birds nesting in infestedboxes and birds nesting in parasite-free boxes suggests thatthe delay is not imposed by social dominance. Nest desertionbetween laying and shortly after hatching was significandy higherin infested nests. There was no difference between infestedand parasite-free nests in clutch size, but hatching successand hence brood size at hatching were significantly smallerin infested nests. Nest-box studies of great tits have beenseminal in the development of evolutionary, ecological, andbehavioral theory, but recently a polemic has arisen in theliterature about the validity of the conclusions drawn fromnest-box studies where the naturally occurring, detrimentalectoparasites are eliminated by the routine removal of old nestsbetween breeding seasons. Our study suggests that this criticismis valid and that the evaluation of the effects of ectoparasitesmay improve our understanding of behavioral traits, life-historytraits, or population dynamics     

九连小檗悬浮培养细胞生理生化特性的研究 Ⅴ．细胞生长与呼吸作用及对主要营养元素吸收、消耗的关系

叙述了九连小檗细胞悬浮培养中细胞生长与呼吸作用及对主要营养元素吸收消耗的关系。细胞接种于新鲜培养液中,呼吸作用强度和对主要营养元素的吸收、消耗便迅速增加。接种后第６天,培养液中ＰＯ４３－几乎被耗尽,Ｋ＋和ＮＯ３－的浓度也减少一半,细胞生长由延迟期进入起始生长期。至第８天呼吸强度达到高峰,细胞生长加速,但细胞生长高峰延迟于呼吸高峰。随后,营养物质的消耗减少,呼吸降低,生长减慢。至静止期细胞生长停止,呼吸作用微弱。这些结果为优化培养条件,改进培养基组成,调控细胞生长和代谢提供了参考。     

Cytokinin concentration in relation to mineral nutrition and benzyladenine treatment in Plantago major ssp. pleiosperma

Cytokinins in shoot and root tissue were studied in plants of Plantago major L. ssp. pleiosperma (Pilger) grown on a concentrated and on a dilute nutrient solution. Cytokinins of plants transferred from the concentrated to the dilute solution were compared with plants treated similarly but with 10⁻⁸ M benzyladenine (BA) added to the dilute solution. Cytokinin concentrations were also measured in plants that had been grown throughout on one of the two nutrient solutions. A restricted supply of minerals was correlated with low cytokinin concentrations. Transfer from a concentrated nutrient solution to a dilute solution depressed the cytokinin concentration by 50% within two days of transfer. This decline did not appear if similar plants were supplied with 10⁻⁸ M BA in the dilute solution. The glucosides were the only major cytokinins enhanced by mineral shortage. This effect of low mineral supply was retarded but not entirely prevented by exogenous BA. The increased synthesis of glucosides in the BA-treated plants was accompanied by lowered concentrations of free bases and their ribosides and of nucleotides. The sum of cytokinins in BA-treated plants was thus similar to that in plants grown at the high mineral level. The results are discussed in relation to a possible role of cytokinins in regulating growth responses to changes in mineral nutrition.